rs28197750 SNP Detail

Summary

• ID
  rs28197750
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76493466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGTGCT GTGATCAGAA
  CTCTGTCCTT GTGACTGAAC AGGAGGCACC CTTAGCATCT GAGCCAGCCA GCTCTCTGGC
  CTCTTGTCAG TTCTTTATCT AGAATATTTC AGAGGCAGAG GAACCATAAT GGTTTAGTAA
  TTTCCTCCAT CTTTTTCTCA GGTTAATCAG CAAATACTTA ACAGGTAGAG AGGTGGTAAA
  W
  GATGCTCCAG CAGACACTGG GAATACAAAG GTGGCTTGCT GTATGTCAGG TCTGTGCTGA
  AGGTTTCCCA AGGGTTCACA CATCCAGTTG TACAACACTC CAGGAGATAG AACTACTGAC
  ACATCCACTG CACACATAAA ACCAGGCATG AAGGGGCACA ACCACTTTTT AGGTCGTCAT
  AACAGAGGAT GGGGATGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37154693	NES08466375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28197750					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37154693	NES08466375	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76493466 () rs orientation: forward

Symbol	Name	Function Class
Rpl36-ps2	ribosomal protein L36, pseudogene 2	1011 bp downstream
Tssr103096	transcription start site region 103096	1357 bp downstream
Tssr109299	transcription start site region 109299	1980 bp downstream