rs28198694 SNP Detail

Summary

• ID
  rs28198694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78717254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTCAAGA AGACGTTTCA CAGATCTTGA GCACCCCTAA
  TATTCTCCAT TCGTGGGAAT ATGAAGAAGA GCTTGCCATC AGAGTTTGTA TCCAAGGTTG
  Y
  AAGGGAGACA AGGAAAAGCG GGCCGTGGTT CCAGCCAACT GGGCGGGGTC GGATCAGGAA
  GCCCGCACCC AGTAGGACCC CGAGTCCCGC GGATGGCCGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37152414	NES08473193	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs28198694					SNP	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37152414	NES08473193	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78717254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	1 bp proximal
D11Bhm79	DNA segment, Chr 11, Boehm 79	1850 bp distal
Gm23219	predicted gene, 23219	1955 bp downstream
Lyrm9	LYR motif containing 9	167 bp upstream
Tssr103332	transcription start site region 103332	147 bp upstream