rs28211059 SNP Detail

Summary

• ID
  rs28211059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84069716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT CAGCGTCTCG GCACCTAAGA
  Y
  CAATGATTGC ATTGTGTTGG GAAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37139781	NES08477407	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C		T	T		T	T		T
ss38733393	mCV24638956	ABI	CRAMUS_MOUSE	f	SNP		T	C				T	T
ss132477359	ENSMUSSNP4025785	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss323769368	CHEV_11_83992392	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28211059					SNP	C	T	C	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37139781	NES08477407	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84069716 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	284 bp proximal
Rr453130	regulatory region 453130	within coordinates
Rr453131	regulatory region 453131	539 bp proximal
Rr453132	regulatory region 453132	1086 bp proximal
Tssr103797	transcription start site region 103797	1237 bp downstream
Tssr103798	transcription start site region 103798	721 bp upstream
Tssr103799	transcription start site region 103799	768 bp upstream
Tssr103800	transcription start site region 103800	902 bp upstream
Tssr103801	transcription start site region 103801	962 bp upstream
Tssr103802	transcription start site region 103802	976 bp upstream
Tssr103803	transcription start site region 103803	1419 bp upstream