rs28211377 SNP Detail

Summary

• ID
  rs28211377
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59524926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAGTCCT ACCAAGAAAC
  CAGGTGCACC CTATTCTAAT CTGTAGTCTC TCTTGGCTAC CAGACACCAG CAACTTACAC
  AAAACTTACA TAAGCCTGGG ACCCCAAGCA AGAGCCCTTT GCTAGTATGT GGAAGAAATG
  GCTGCATAAA TGGCCAGAGG AATTGGGTTA TAGTCCTCCT AGAGACAGCC AGGGAGCCCT
  W
  ACGTGGATCC TCAAAGCCTT ACATGCTAGG CAGCCCACAA GTGATGGACT ACTCTGTCAT
  AGAGATTGAG TGCTCTCCCA GAAACCCTGC CAAGCCAGTT GGGAAACCTG TCCAGCCAGT
  GCAGAGCCTC CGGGATCACA ATCCTCACTT AGGGGCAGGC AGTATCAGTC AAGCGCTGCA
  GTGGCTTTCC CAGTCCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37194797	NES08427535	PERLEGEN	MM_PANEL2	f	SNP		T	A	A	T	A	A	T	T
ss132238173	ENSMUSSNP5667818	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs28211377					SNP	A	T	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37194797	NES08427535	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59524926 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	1679 bp downstream
Rr448217	regulatory region 448217	606 bp distal
Rr448218	regulatory region 448218	862 bp distal
Rr448219	regulatory region 448219	1864 bp proximal
Tssr101856	transcription start site region 101856	94 bp upstream