rs28211993 SNP Detail

Summary

• ID
  rs28211993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25352665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAGAG CCAGAGCCAG
  AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG GAAGCAGAGT CCTGTCCAGG CCTCAGGTCT
  GGGAGATGGT GAACGGCATC CTCTTCCACT CGAGGGGCCT GTCCCAGACC TTAAGGACCT
  GGAGATATCG CTGCTTCTTG TTCTAGGCTG CTAAAGTCTG CAAGGATTTG TTTCTCAGCC
  W
  CCCATGGAGC TGCTGGTTTT GTTTGTTTGC TTTGTTTTGT TTGTTTTACC AATTTGAGTG
  AAAAACTTTA AACCGACTAC AAAGCAGAAA TAACAGCATA ATGAGCCCCA GATGGACGAA
  TTATCAACAT TTTGACAAAT TTACAATCAA TATTTTTATT AAATTCTATT TTATTTTATT
  AATTTTTGCA TAATATTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37422582	NES08776729	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28211993					SNP	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422582	NES08776729	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25352665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	1349 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	1559 bp upstream
Rr56431	regulatory region 56431	864 bp distal
Rr396822	regulatory region 396822	1459 bp downstream
Tssr16724	transcription start site region 16724	1432 bp downstream
Tssr22977	transcription start site region 22977	1722 bp upstream
Tssr22978	transcription start site region 22978	1694 bp upstream
Tssr22979	transcription start site region 22979	1670 bp upstream
Tssr22980	transcription start site region 22980	1649 bp upstream
Tssr22981	transcription start site region 22981	1613 bp upstream
Tssr22982	transcription start site region 22982	1573 bp upstream
Tssr22983	transcription start site region 22983	1541 bp upstream
Tssr22984	transcription start site region 22984	1524 bp upstream