rs28211999 SNP Detail

Summary

• ID
  rs28211999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25352003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGAACCA TGGTGAGAGT
  GGTTAGTAAC TTGGTGAACT GTGCTAACAT TTGAAAAGTG CCATCAGCCA AACATACTCA
  ATTCCCACTT TCCTCTAGTT TTGCTCAACC CTGCTGAGGC TCCGGACTAG AGCCTTTGCG
  TGCATGGGTT TTTGCCTGTC TCCAGCCGGG TGTACTTACC TGTAGTTCTT TTGAAAGTGT
  Y
  CTCTTGAGGA TCCATGTAGA ACATTTCACC TCTGCTCAAG TCTCCATCCC TCTCTCCCAT
  GTCTTACTTT CCCTGCTTTT CACTGTGTAC CGTACATCCT GGTTTTAGGA GTTTCTGGCT
  CAGCCTTGAT GTCTGCCTGC ATCTCCACCA TTGTCTGACC CCCTCCTAGA AGCTGCATCT
  AAGGTCTTGC TTCTATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422588	NES08776886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28211999					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422588	NES08776886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25352003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	687 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	897 bp upstream
Rr56431	regulatory region 56431	202 bp distal
Rr396822	regulatory region 396822	797 bp downstream
Tssr16724	transcription start site region 16724	770 bp downstream
Tssr22977	transcription start site region 22977	1060 bp upstream
Tssr22978	transcription start site region 22978	1032 bp upstream
Tssr22979	transcription start site region 22979	1008 bp upstream
Tssr22980	transcription start site region 22980	987 bp upstream
Tssr22981	transcription start site region 22981	951 bp upstream
Tssr22982	transcription start site region 22982	911 bp upstream
Tssr22983	transcription start site region 22983	879 bp upstream
Tssr22984	transcription start site region 22984	862 bp upstream