rs28212001 SNP Detail

Summary

• ID
  rs28212001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25351930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTGCTC AGGAGGAGGC
  CTGATGGGAA CAGAAGTCTT CCCAAGGCTG TGGAAGAGGG CTAGCATGAA CCTATGAGAA
  CCATGGTGAG AGTGGTTAGT AACTTGGTGA ACTGTGCTAA CATTTGAAAA GTGCCATCAG
  CCAAACATAC TCAATTCCCA CTTTCCTCTA GTTTTGCTCA ACCCTGCTGA GGCTCCGGAC
  Y
  AGAGCCTTTG CGTGCATGGG TTTTTGCCTG TCTCCAGCCG GGTGTACTTA CCTGTAGTTC
  TTTTGAAAGT GTCCTCTTGA GGATCCATGT AGAACATTTC ACCTCTGCTC AAGTCTCCAT
  CCCTCTCTCC CATGTCTTAC TTTCCCTGCT TTTCACTGTG TACCGTACAT CCTGGTTTTA
  GGAGTTTCTG GCTCAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422590	NES08776882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28212001					SNP	T	T	T	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422590	NES08776882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25351930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	614 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	824 bp upstream
Rr56431	regulatory region 56431	129 bp distal
Rr396822	regulatory region 396822	724 bp downstream
Tssr16724	transcription start site region 16724	697 bp downstream
Tssr22977	transcription start site region 22977	987 bp upstream
Tssr22978	transcription start site region 22978	959 bp upstream
Tssr22979	transcription start site region 22979	935 bp upstream
Tssr22980	transcription start site region 22980	914 bp upstream
Tssr22981	transcription start site region 22981	878 bp upstream
Tssr22982	transcription start site region 22982	838 bp upstream
Tssr22983	transcription start site region 22983	806 bp upstream
Tssr22984	transcription start site region 22984	789 bp upstream