rs28212013 SNP Detail

Summary

• ID
  rs28212013
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25350577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGATGTG TGTTATGGCC
  AGGATGTGTT AGCACTACCC CAAGCTTCTC ATTCACATGG CCTCCCTAAC TGGAACTCAC
  CTGAACCGGG AATGGATATC TTCAGCCCCA CTTAGGCCAA ATCGGGCTTT CTGCTGGGAA
  CAAGGAATTG TCACTAACCC CGCCCAGGAC CCTGGACCCA CTGGACATTC CAAACTGCCC
  W
  ACCCTGGAAA TGCTATTAGA ACCACTGCCA CGGGGAGGGG GAGGGTGGCA AGCTACCAGC
  TGTCTCCTAT CCCCAGCACT GTTACTCACG AGCCTCGCCA GGCTGTCAGG CGAGAAGCAG
  GTGCTCCAGA GCTCGGCGGC GTCCGTCACA CTGGGTGGGA GGGGCTGTCA GGCACCGTGC
  CCGCTATGCT CCCGCACCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422602	NES08776870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28212013					SNP	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422602	NES08776870	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25350577 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	1788 bp downstream
Cpgi11321	CpG island 11321	within coordinates
Gm74786	predicted gene, 74786	488 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	1177 bp distal
Rr56430	regulatory region 56430	1976 bp distal
Rr56431	regulatory region 56431	within coordinates
Rr396822	regulatory region 396822	328 bp upstream
Tssr16724	transcription start site region 16724	636 bp upstream
Tssr22977	transcription start site region 22977	341 bp downstream
Tssr22978	transcription start site region 22978	368 bp downstream
Tssr22979	transcription start site region 22979	405 bp downstream
Tssr22980	transcription start site region 22980	428 bp downstream
Tssr22981	transcription start site region 22981	456 bp downstream
Tssr22982	transcription start site region 22982	504 bp downstream
Tssr22983	transcription start site region 22983	542 bp downstream
Tssr22984	transcription start site region 22984	553 bp downstream