rs28212017 SNP Detail

Summary

• ID
  rs28212017
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25350118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGAACT CTGTCCACAT
  GGAAAGATTC TCCCATGAGA CATCTGGAGA GGCAGTTCCA GAGAAAGAGC AGCCCCAGCC
  CACATGCCAG GCCCACCCCT TACCTGGTAA GAACTGAGTG CCTGCTGGCT GGGTGTTCTT
  CTTGGGGCTA GTGATGGTCT CTTCTGCAGC TAAGAGAGAG TCGTGGCATC TCACTCAATG
  M
  CAGGAGGGTC TGCAAAAGCA TGCCCCTGAG GGAAGGTACA GGTGCCCACA CATACAGTAC
  CTGCCAGCCG CCTCTCTAGG TTGCATACAT GCTCTGCCAG GCTGAGAGTC AAAGCCTGCA
  GCCTGGGGGC TGCCTCCGGG CTGGGCACCT TGGAGAGGTC AAAGGCCAGG GCAGGGGTAT
  CCCCTGAAAG GGTTATCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422606	NES08776866	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28212017					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422606	NES08776866	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25350118 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	1329 bp downstream
Cpgi11321	CpG island 11321	444 bp proximal
Gm74786	predicted gene, 74786	947 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	718 bp distal
Rr56430	regulatory region 56430	1517 bp distal
Rr56431	regulatory region 56431	within coordinates
Rr396822	regulatory region 396822	787 bp upstream
Tssr16724	transcription start site region 16724	1095 bp upstream
Tssr22977	transcription start site region 22977	800 bp downstream
Tssr22978	transcription start site region 22978	827 bp downstream
Tssr22979	transcription start site region 22979	864 bp downstream
Tssr22980	transcription start site region 22980	887 bp downstream
Tssr22981	transcription start site region 22981	915 bp downstream
Tssr22982	transcription start site region 22982	963 bp downstream
Tssr22983	transcription start site region 22983	1001 bp downstream
Tssr22984	transcription start site region 22984	1012 bp downstream