rs28212020 SNP Detail

Summary

• ID
  rs28212020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25349535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTACACCA GAGGGGTCTT CTCGTGCCCC CTCCCCAAGG
  CCAATCTTCA CAACTCAAGT CTGGCCTAGC ATCTCTCCCC GAGGGAGCAG TTTATTTGAC
  R
  GAGAAGGGAT GAGAGGCACC TTTGCCCAAC AGCAGGACCA CAGGGGAAGT GAAGCAAGGG
  GTGTCTCTGA TTAGGGGGTC CTAGATCTCC CCTTTCCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422609	NES08776863	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	G		G	G	G	G	G
ss146378509	ENSMUSSNP1549446	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28212020					SNP	G	G	A	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422609	NES08776863	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25349535 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	746 bp downstream
Cpgi11321	CpG island 11321	1027 bp proximal
Gm74786	predicted gene, 74786	1530 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	135 bp distal
Rr56429	regulatory region 56429	1734 bp distal
Rr56430	regulatory region 56430	934 bp distal
Rr56431	regulatory region 56431	65 bp proximal
Rr396822	regulatory region 396822	1370 bp upstream
Tssr16723	transcription start site region 16723	1853 bp downstream
Tssr16724	transcription start site region 16724	1678 bp upstream
Tssr22977	transcription start site region 22977	1383 bp downstream
Tssr22978	transcription start site region 22978	1410 bp downstream
Tssr22979	transcription start site region 22979	1447 bp downstream
Tssr22980	transcription start site region 22980	1470 bp downstream
Tssr22981	transcription start site region 22981	1498 bp downstream
Tssr22982	transcription start site region 22982	1546 bp downstream
Tssr22983	transcription start site region 22983	1584 bp downstream
Tssr22984	transcription start site region 22984	1595 bp downstream