rs28212022 SNP Detail

Summary

• ID
  rs28212022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25349377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCTACT GTCTAATGCC
  CTCTGGTGGC CTCCAAGACA ACGCCTCTGT GCTACCTGGG TGGGGCTTGC AAGTGTGGGA
  CATCTAAGCC TTAGAGAGTT CTGGCTCTAC CAGACCAGGA CGCTCTCAGC TTCTGTGCTG
  GCCACGCAGA ATCAACACAG TAGGTCTGAG AAAGCTCTGC TGCCTGCCTT AAGACCTAGG
  Y
  GGGAGAGCCT CCTGGATGCC GAGAGCCTGA TGCATCTGTT TGCCTCCCAG GGCTCCACAG
  TACACCAGAG GGGTCTTCTC GTGCCCCCTC CCCAAGGCCA ATCTTCACAA CTCAAGTCTG
  GCCTAGCATC TCTCCCCGAG GGAGCAGTTT ATTTGACGGA GAAGGGATGA GAGGCACCTT
  TGCCCAACAG CAGGACCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37422611	NES08776861	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28212022					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37422611	NES08776861	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25349377 () rs orientation: forward

Symbol	Name	Function Class
Clic3	chloride intracellular channel 3	588 bp downstream
Cpgi11321	CpG island 11321	1185 bp proximal
Gm74786	predicted gene, 74786	1688 bp upstream
Paxx	non-homologous end joining factor	within coordinates
Rr42075	regulatory region 42075	within coordinates
Rr56429	regulatory region 56429	1576 bp distal
Rr56430	regulatory region 56430	776 bp distal
Rr56431	regulatory region 56431	223 bp proximal
Rr396822	regulatory region 396822	1528 bp upstream
Tssr16723	transcription start site region 16723	1695 bp downstream
Tssr16724	transcription start site region 16724	1836 bp upstream
Tssr22977	transcription start site region 22977	1541 bp downstream
Tssr22978	transcription start site region 22978	1568 bp downstream
Tssr22979	transcription start site region 22979	1605 bp downstream
Tssr22980	transcription start site region 22980	1628 bp downstream
Tssr22981	transcription start site region 22981	1656 bp downstream
Tssr22982	transcription start site region 22982	1704 bp downstream
Tssr22983	transcription start site region 22983	1742 bp downstream
Tssr22984	transcription start site region 22984	1753 bp downstream