rs28214109 SNP Detail

Summary

• ID
  rs28214109
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79594569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAACCAT CTGTAATGAG
  ATCTGGGGCC ACCTTCTAAG TCTGTTAGGC ATACATGCAG GCAGAATGAT AAATACTTAC
  TAGTTATAGC ATGTCGGGCA ATAATAGCAC AAGCCCTCTG GAGGGCGTTT CCTTCGCCAG
  GCTGTGCTAT CCTACTTACA GGAGTGCACT TAAGAAGGCT GGTGAGTGGG ACCTTTGACT
  K
  CCCGGTTGGC ATCACAGCCC TGCACCATGG GGAGGGCCAC CCTCTCCTCT CTCCTGGAAC
  AGATGCCATG GCCATAGGAT TCAGAGACCT AATTTCCTTA CTAAAACTTT AAAGACTTTT
  TTTTTTTTAA TTACAAATTT AAATACTAGA TCTAGGAACT AGGATTGTAG CTCTGTTACG
  TTAGTTCAGC ACGCACGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37150835	NES08467885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28214109					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150835	NES08467885	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79594569 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	133 bp downstream
Cpgi3370	CpG island 3370	63 bp proximal
Gm11205	predicted gene 11205	827 bp upstream
Gm74173	predicted gene, 74173	within coordinates
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	907 bp upstream
Rr402778	regulatory region 402778	677 bp upstream
Rr452325	regulatory region 452325	within coordinates
Rr452326	regulatory region 452326	69 bp distal
Rr452327	regulatory region 452327	691 bp proximal
Rr452328	regulatory region 452328	889 bp proximal
Tssr109524	transcription start site region 109524	727 bp downstream