rs28214110 SNP Detail

Summary

• ID
  rs28214110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79594515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGCTGCT CTTCCTGAGG
  TCCTGAGTAC GATTCTCAGC AACCACATGG TGGCTCACAA CCATCTGTAA TGAGATCTGG
  GGCCACCTTC TAAGTCTGTT AGGCATACAT GCAGGCAGAA TGATAAATAC TTACTAGTTA
  TAGCATGTCG GGCAATAATA GCACAAGCCC TCTGGAGGGC GTTTCCTTCG CCAGGCTGTG
  M
  TATCCTACTT ACAGGAGTGC ACTTAAGAAG GCTGGTGAGT GGGACCTTTG ACTGCCCGGT
  TGGCATCACA GCCCTGCACC ATGGGGAGGG CCACCCTCTC CTCTCTCCTG GAACAGATGC
  CATGGCCATA GGATTCAGAG ACCTAATTTC CTTACTAAAA CTTTAAAGAC TTTTTTTTTT
  TTAATTACAA ATTTAAATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37150836	NES08467884	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28214110					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150836	NES08467884	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79594515 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	187 bp downstream
Cpgi3370	CpG island 3370	117 bp proximal
Gm11205	predicted gene 11205	881 bp upstream
Gm74173	predicted gene, 74173	within coordinates
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	961 bp upstream
Rr402778	regulatory region 402778	731 bp upstream
Tssr109524	transcription start site region 109524	781 bp downstream