rs28214112 SNP Detail

Summary

• ID
  rs28214112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79593479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAATCAC AAGTAGTGGG
  CTAGCCAGGA CTTCAAAGAG AGACCCACCC TGTCTCAAAA TAAACAAAAA TGTAAAAATA
  AAATTAAACC CACATTGCTG CTTCTGGGTG TGTATCTCAC ATGAACTTGC CACTCTTCTC
  ATTGGAGTAT TATTGACAAC CAAAAAAGTC TACCAGGCAG TGACAGGTAA AGAGAATGTG
  R
  CCTAAGCTGT GAGAGAACAA AGCCAGCACA TCCTTCTGCA GTTACAAAAT GGAAGCTGAG
  GGGCTGAAGT AAGTTGGTCC CCATCAGACA CGCTGCATCA TTCCTTAGAC ATGAAGGGTC
  TAAGGTTGTC AGCCTCTGAA AAGCAGAAAG AATGATGGTT GCCAGAGACC CGTGGAGAAG
  GGATATGGTG TCTAAGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37150838	NES08467894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28214112					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150838	NES08467894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79593479 () rs orientation: forward

Symbol	Name	Function Class
B230207N12Rik	RIKEN cDNA B230207N12 gene	1223 bp downstream
Cpgi3370	CpG island 3370	1153 bp proximal
Gm11205	predicted gene 11205	1917 bp upstream
Gm74173	predicted gene, 74173	299 bp downstream
n-TTcgt3	nuclear encoded tRNA threonine 3 (anticodon CGT)	1997 bp upstream
Rr402778	regulatory region 402778	1767 bp upstream
Rr452325	regulatory region 452325	711 bp proximal
Rr452326	regulatory region 452326	1000 bp proximal
Rr452327	regulatory region 452327	1781 bp proximal
Rr452328	regulatory region 452328	1979 bp proximal
Tssr109524	transcription start site region 109524	1817 bp downstream