rs28220622 SNP Detail

Summary

• ID
  rs28220622
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32396893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTACACA CACATACAAT
  GTAAAGATAC ATTGTCACAA ACACCCTCCT ATGTCACTTC ATCCTAATCC ACTTGGCTTG
  TTAATCTCTT TACTATTCTG TTCTGCTGGG GTTGTAACCC ACACACACCA GGAAGTGTTT
  TTACTAGATT AGCTGAGTGA CGTCACTACT GCCCATTCTC CAGTGTGAGT GAGGCACCAG
  W
  GTTCAACTGT CCCCAGATGA TGGACAGTGG GTGGGTCCTG TCGTGCTGCC CTGGTGAGCA
  GTCATCCTCT CTGTAATTAC CAGTATCTGC TATGCTAGTG TTTCTTTAGA GCAGATCACT
  AGAACATTCG TGGCTCACAG CGCCGTACTT TGGAAGCTCT GACACACATC GACAAATTAC
  CTTCCCAAAT AGCACCAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37399750	NES08760419	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28220622					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399750	NES08760419	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32396893 () rs orientation: forward

Symbol	Name	Function Class
Rr554941	regulatory region 554941	1145 bp distal
Rr554942	regulatory region 554942	within coordinates