rs28220623 SNP Detail

Summary

• ID
  rs28220623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32396059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCCCATG TACTGTTTCT
  TAATACAGGA CAACCTTACT ATACACATTG TGCCTCACTG CTACTGCTGT GGCCCCCAGG
  TCTTGCCTCT AGCATCTACA TTCCGCAATA GGTGCTTGGG ATAGGATCAA GATGGGATTT
  ATCGCAATAG GATAAATCAG GAACCGCATC ATATGGCCAG TCTTGGCCAA TGGGACCTTA
  R
  TAGACATGCC ATAAACACAG GCACATATAT ACAAATATAT GTTTGTGTGT ATGTGTATAG
  AGATAGAGAT AGAGACAGAA TTTGTTTTTA GGCAAGATCT TGTCTATCCT GGAAATTGCT
  ATGTAGACCA GGTTGGCCTC CAACTCAGAC CTTTGCCTTC CTCTGCCTCC CTAAGGCTGG
  GATTAAAGGC GTGCTCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37399751	NES08760438	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28220623					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399751	NES08760438	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32396059 () rs orientation: forward

Symbol	Name	Function Class
Rr554941	regulatory region 554941	311 bp distal
Rr554942	regulatory region 554942	717 bp proximal