rs28220627 SNP Detail

Summary

• ID
  rs28220627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32393914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTCTCC CTCTGAACTT
  CATTCGGTCC AGTCAGCTCC TCACACTTTA GAAGTGAGTC ACTGAGTCAA ACGCCCATTC
  AAGGGGCAGT GGCTTGAGCT ACTTCCTGCA GAAAGAACCA TAAATTATTT GAATTCTCCT
  CAGAAGACAG AAGGCCCTTT CTTCCAGTCT GCTTGTTTTC TCAGCCATTG ACTTCTGCGG
  Y
  GTGGATGCAG CACACATTCT TATTTCATTT AGACTCTGTT GTTTCCCTGA GCTGGGGCTG
  GAAACCAGGG CCTCTCAAGA TGGGCAGCTC TGTACCTGCA AGCTTTCCCA GCTCTGAATT
  TTACCCTGAA AATCTTAATC CATAGCTATT TCTTCTGATG CTCCAATGGT TTTGTTTTTG
  GATTTGAGAG CCCCTTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37399755	NES08760453	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28220627					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399755	NES08760453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32393914 () rs orientation: forward

Symbol	Name	Function Class
Rr554939	regulatory region 554939	1695 bp distal
Rr554940	regulatory region 554940	663 bp distal
Rr554941	regulatory region 554941	1813 bp proximal