rs28223302 SNP Detail

Summary

• ID
  rs28223302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83600524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTGAGT GATCAACCAT
  GGGTCTGCAG TGATGAGAGA TGTGTGACTG TCACTAGAGA TTTTATGGAA TCTTCTAAGG
  TGTAAAGAAG GCGCTGTGAT GAGGGAAGTT TCTTTCTACT GAGACTGCAT AGGCTGTGGA
  AGGGCAGAAC ACTCTCCCAA GGGCAGGAAT CAACAGCTGG GCTTAAGTGT GGGACAGGAG
  Y
  TGGTGAAGCT GAGGGAAGTG CCCTGTGGTG CAGAGGAGGG TACAGAGTAT GCCAGTCTCC
  TGCAGGTGAT GAGCCTTCAG ATATCCAGCA TCAATTCTCA ACCTTGCCTT TCTGACTGTG
  TCAGGCTCTA TAAACACCAT TGTATGTTTC AAAATTAGAA AAACCTGGCG CTTGTCCTAA
  GCCGCCCCCA CGCAGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141027	NES08459484	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28223302					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141027	NES08459484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83600524 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	1922 bp distal
Tssr103748	transcription start site region 103748	602 bp downstream
Tssr103749	transcription start site region 103749	582 bp downstream
Tssr103750	transcription start site region 103750	1526 bp upstream
Tssr103751	transcription start site region 103751	1538 bp upstream
Wfdc18	WAP four-disulfide core domain 18	within coordinates