rs28223303 SNP Detail

Summary

• ID
  rs28223303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83600322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT GCATTTGAGA CTTGTGAAAG
  Y
  ACATGCTGAG TGATCAACCA TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37141028	NES08459483	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C		C	C	T	C		C	T	C		T
ss38694017	mCV23453956	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss132473467	ENSMUSSNP5244851	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss323768120	CHEV_11_83522998	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28223303					SNP	C	T	C	C	T	C	C	T	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141028	NES08459483	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83600322 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	1720 bp distal
Tssr103748	transcription start site region 103748	400 bp downstream
Tssr103749	transcription start site region 103749	380 bp downstream
Tssr103750	transcription start site region 103750	1728 bp upstream
Tssr103751	transcription start site region 103751	1740 bp upstream
Wfdc18	WAP four-disulfide core domain 18	within coordinates