rs28223309 SNP Detail

Summary

• ID
  rs28223309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83599158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTTTGC CTATGTTTTG
  ACATGACATC CACACAACAG AAGGGGAAAG TTACAGATAC CCAGGAATGT CTCCTCAACA
  TGATGGAAGG ACTGGACACA CATGGAACAA AGCATGTAAC CAAACAAACC CCCTCAACCT
  CTGAGAAGGA ACCATACAGA AAGAAGACAT TCCAAAGTCA GCCCATGGTG TGTAGGGCAT
  Y
  CCCACAGCTC TTGGACTGTG CAACTACAGC TCTGTCTCTG AGTCTATAGT CTGGAGAGCA
  AAGTAGGCAA GCTCTCTGCT GGGGACAAGA GATTCTGCAT GCTCTCCTAT GGCTCTCATC
  CTTCCACTGC TCAAGTATGT AGCCTTCTGT ATGAAGACCT GACTTACAGA AAAGCACTGG
  TCAAAGAACC AGCCATCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141035	NES08459476	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28223309					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141035	NES08459476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83599158 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	556 bp distal
Tssr103748	transcription start site region 103748	761 bp upstream
Tssr103749	transcription start site region 103749	769 bp upstream
Wfdc18	WAP four-disulfide core domain 18	683 bp upstream