rs28223310 SNP Detail

Summary

• ID
  rs28223310
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83599048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAAACA AGCAAGCAAG
  CAAACAACAA TCAAAACCCC ACAACACTGC TGTTGTGAGT TTATGGTTAT TCCAAAAACA
  TGGCATTAAA AACAAATAGA AGGGGTTTTG TTTTGTTTGC CTATGTTTTG ACATGACATC
  CACACAACAG AAGGGGAAAG TTACAGATAC CCAGGAATGT CTCCTCAACA TGATGGAAGG
  M
  CTGGACACAC ATGGAACAAA GCATGTAACC AAACAAACCC CCTCAACCTC TGAGAAGGAA
  CCATACAGAA AGAAGACATT CCAAAGTCAG CCCATGGTGT GTAGGGCATT CCCACAGCTC
  TTGGACTGTG CAACTACAGC TCTGTCTCTG AGTCTATAGT CTGGAGAGCA AAGTAGGCAA
  GCTCTCTGCT GGGGACAAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141036	NES08459475	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28223310					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141036	NES08459475	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83599048 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	446 bp distal
Tssr103748	transcription start site region 103748	871 bp upstream
Tssr103749	transcription start site region 103749	879 bp upstream
Wfdc17	WAP four-disulfide core domain 17	1953 bp downstream
Wfdc18	WAP four-disulfide core domain 18	793 bp upstream