rs28223311 SNP Detail

Summary

• ID
  rs28223311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83599015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAAAA ACAAACAACA
  AAAGCCAAAA AAAACAAAAA ACAAGCAAGC AAGCAAACAA CAATCAAAAC CCCACAACAC
  TGCTGTTGTG AGTTTATGGT TATTCCAAAA ACATGGCATT AAAAACAAAT AGAAGGGGTT
  TTGTTTTGTT TGCCTATGTT TTGACATGAC ATCCACACAA CAGAAGGGGA AAGTTACAGA
  Y
  ACCCAGGAAT GTCTCCTCAA CATGATGGAA GGACTGGACA CACATGGAAC AAAGCATGTA
  ACCAAACAAA CCCCCTCAAC CTCTGAGAAG GAACCATACA GAAAGAAGAC ATTCCAAAGT
  CAGCCCATGG TGTGTAGGGC ATTCCCACAG CTCTTGGACT GTGCAACTAC AGCTCTGTCT
  CTGAGTCTAT AGTCTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141037	NES08459474	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28223311					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141037	NES08459474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83599015 () rs orientation: forward

Symbol	Name	Function Class
D11Mit119	DNA segment, Chr 11, Massachusetts Institute of Technology 119	413 bp distal
Tssr103748	transcription start site region 103748	904 bp upstream
Tssr103749	transcription start site region 103749	912 bp upstream
Wfdc17	WAP four-disulfide core domain 17	1920 bp downstream
Wfdc18	WAP four-disulfide core domain 18	826 bp upstream