rs28225452 SNP Detail

Summary

• ID
  rs28225452
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82719175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGGCATT TTGGGAGAGG
  ATGCTGACTA CCTCAGCTCC CTTGGGATTT GAAGCAAGCA CTATACCAAC AATTAAGCTG
  TCTCCCCAGC CCCTACTTAC TTTTTAAATC TGTATACTTC CCAGAGGTAG ATAACCGTAG
  GGATGAAAAG TGACATCCAG AAGTAGCTGG CCAAGAGAGA CGCATCTGAC AGGCAGCACA
  M
  GGCAGACATT ACTAACTGTG CTTTGATTCT AAAATGGCAG TGGCCTGCCT TTCAGTGACT
  CTTTGTCTTC CTGGTCACCT GGTCCCGTGT GTTTCAGGGC TGGGACACAG CTGGATGACT
  ATTCAGCCCA CATGATAAAG AAACCCTGTT TCTTTTCTTT CTTTCTTTTT TTTTTTTTAA
  GATTTGTTTA TTTATTATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37143089	NES08457517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28225452					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37143089	NES08457517	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82719175 () rs orientation: forward

Symbol	Name	Function Class
D11Pas73	DNA segment, Chr 11, Pasteur Institute 73	731 bp proximal
Gm72007	predicted gene, 72007	773 bp upstream
Rffl	ring finger and FYVE like domain containing protein	within coordinates
Rr386369	regulatory region 386369	within coordinates
Tssr103583	transcription start site region 103583	583 bp downstream
Tssr103584	transcription start site region 103584	772 bp upstream
Tssr109581	transcription start site region 109581	675 bp downstream