rs28225454 SNP Detail

Summary

• ID
  rs28225454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82717934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCACCT CCACTCTTCT
  CCCACCTCCA GAGCTCCCTG CTGGCTCTCA GGCACTCAGC ACTCCCCACC ACACCTCTTA
  CTGAAGAGGC CCACTAGCAC TTCCTCCACT CCCTCCATTC TGCTCTTTAG TCCCACTTCC
  CTCTTCCTCC TGGGTTCTTC AGGTTCCAGT GTGTCACCTG CCTGGACAGC TTCCCCTGAT
  Y
  GCAACTGGGA CCCTGTCTCT GGAAGCTCTC CCCATTTAAG CTCCCTGCCC CCATGTCCCT
  GCTTTCCTTC ACAGTTTCCA TAATATGTGA CTCAGACACC CAAATTGTGG GATGAATAGA
  ACGTCGTCAA ACAGCAATCA TATTTTATCA GCACGGCTGA GACATCGAGT TCTATTTCTC
  CTTAGAACCA AAAAGCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	MOLF/EiJ
ss37143091	NES08457544	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	MOLF/EiJ
rs28225454					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37143091	NES08457544	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82717934 () rs orientation: forward

Symbol	Name	Function Class
D11Pas73	DNA segment, Chr 11, Pasteur Institute 73	1972 bp proximal
Rffl	ring finger and FYVE like domain containing protein	within coordinates
Rr386369	regulatory region 386369	within coordinates
Tssr103583	transcription start site region 103583	652 bp upstream
Tssr109581	transcription start site region 109581	1916 bp downstream