rs28227540 SNP Detail

Summary

• ID
  rs28227540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80073234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTACA GATGTGTGCC TTCATGCCTG
  R
  TGAGGTCCTC TGAATTTACT GATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37150063	NES08460031	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		G
ss323761716	CHEV_11_79995910	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs28227540					SNP	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150063	NES08460031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80073234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1353 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	1335 bp distal
Rnf135	ring finger protein 135	1443 bp upstream
Rr386348	regulatory region 386348	589 bp downstream
Rr402781	regulatory region 402781	1307 bp upstream
Rr452449	regulatory region 452449	824 bp distal
Rr452450	regulatory region 452450	953 bp proximal
Rr452451	regulatory region 452451	960 bp proximal
Rr452452	regulatory region 452452	1147 bp proximal
Tssr3599	transcription start site region 3599	1499 bp upstream
Tssr103509	transcription start site region 103509	1453 bp upstream
Tssr103510	transcription start site region 103510	1478 bp upstream