rs28227541 SNP Detail

Summary

• ID
  rs28227541
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80072657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC AGATGCCCAA GGTACTTGTT
  M
  GGTGCTTCTT TGTTTCTTCT TTCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37150064	NES08460046	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	C		C
ss323761712	CHEV_11_79995333	CHEVERUD	SCREENING_POP	f	SNP								A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28227541					SNP	A	A	A	A	A	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150064	NES08460046	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80072657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3379	CpG island 3379	1930 bp proximal
D11Bhm113	DNA segment, Chr 11, Boehm 113	758 bp distal
Rr386348	regulatory region 386348	12 bp downstream
Rr402781	regulatory region 402781	1884 bp upstream
Rr452448	regulatory region 452448	1980 bp distal
Rr452449	regulatory region 452449	247 bp distal
Rr452450	regulatory region 452450	1530 bp proximal
Rr452451	regulatory region 452451	1537 bp proximal
Rr452452	regulatory region 452452	1724 bp proximal