rs28227543 SNP Detail

Summary

• ID
  rs28227543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80072158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTACTT GATTGCATCT
  TCTGTGCTGT GCTGGTTGCA CAGGCTTCAT ACCTGGGTAG ATAGATGAGC ATCTCTTTAT
  CTTGTTAACC AGAACATTTC CGGGCACCTG TTGACCTTGA GGCTGATCAT TCATGGGTCA
  TTAGGAGGTA AGCGCTAGAA GCTTATAAGT CATTGGAGTC AGGCTCCAAA CAGTCAGGAT
  Y
  GGATGTGTGT AAAGTGTGGG AACTGCTCCT TTTAATTTTA GGTTTATTTT GTTTTGCTGC
  TTAGTATACT TCCATCATTA GCCCTTAAAG GAACAGAATA ATAATTATTT TAATTTTTTT
  CCCCAAGAGG GCTGGAGCAA CAGTTCAGTA TTTAAGGGCT CTTGCTGCTC TTACAGAGGA
  CTCTGGTTCC CAGCCACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37150066	NES08460044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28227543					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150066	NES08460044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80072158 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm113	DNA segment, Chr 11, Boehm 113	259 bp distal
Rr386348	regulatory region 386348	within coordinates
Rr452448	regulatory region 452448	1481 bp distal
Rr452449	regulatory region 452449	231 bp proximal
Tssr103507	transcription start site region 103507	1997 bp downstream
Tssr103508	transcription start site region 103508	1964 bp downstream