rs28227548 SNP Detail

Summary

• ID
  rs28227548
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80069832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCCTGTCT AGAAAAACTA AAAACAAAAA ACAGAAACAA
  AAGCAAGCAA GCAAACAACA ACAAAAACTA CAGATAGGGG TGGATGTTGC AATTAAAAAA
  M
  AAAAAGTGCC CACAGCATCC AGACAAAATT TTTAAAGTTT AATCTAAACC TAACTATGAA
  GAAATCCTCA GACATTCATT TATTACTTAC ATGTTGCTAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37150071	NES08460197	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28227548					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37150071	NES08460197	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80069832 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	48 bp downstream
Adap2os	ArfGAP with dual PH domains 2, opposite strand	1377 bp upstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	1981 bp proximal
Rr386348	regulatory region 386348	1759 bp upstream
Rr452447	regulatory region 452447	1023 bp distal
Rr452448	regulatory region 452448	824 bp proximal
Tssr3598	transcription start site region 3598	1515 bp downstream
Tssr103493	transcription start site region 103493	1687 bp downstream
Tssr103494	transcription start site region 103494	1625 bp downstream
Tssr103495	transcription start site region 103495	1558 bp downstream
Tssr103496	transcription start site region 103496	1063 bp downstream
Tssr103497	transcription start site region 103497	1013 bp downstream
Tssr103498	transcription start site region 103498	961 bp downstream
Tssr103499	transcription start site region 103499	779 bp downstream
Tssr103500	transcription start site region 103500	722 bp downstream
Tssr103501	transcription start site region 103501	439 bp downstream
Tssr103502	transcription start site region 103502	341 bp downstream
Tssr103503	transcription start site region 103503	282 bp downstream
Tssr103504	transcription start site region 103504	245 bp downstream
Tssr103505	transcription start site region 103505	148 bp downstream
Tssr103506	transcription start site region 103506	152 bp upstream
Tssr103507	transcription start site region 103507	316 bp upstream
Tssr103508	transcription start site region 103508	347 bp upstream