rs28228840 SNP Detail

Summary

• ID
  rs28228840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79420553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCACTATT GAGATTATGA
  CTGTTGGTAG ATGCTTAAAG ATCAACTGCA CTGGCTTTTG TGCGATAGTA TTCCGCTTCA
  TCTTCAAGTT GGATGGTAGG ATTCTCACGA TACTTTATAC GTCAGTCACA TACCAAAAAA
  AAAAGCACTT TAAATTGATT TAGTAAGAAG TGTCCGTCCT TTCCTACCAG AGTAGACTTA
  Y
  GCAGTCAGTG TTAAATGACT TAATGTAGGT GATTTTAATC ACATTAGTTC ATTCACAGTG
  CTGTATACAT CACAGTGTTG TACACGCTAG CCGTGTACCA CAGGACAACA TAATAGATCT
  GCTGTTGGTT GTCTTCAGCC AGATGTGCTG TCATGCCCTA GTAAACAAGC TGTTGGCACC
  ATCAGACTCT CTCTTTGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151169	NES08470268	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228840					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151169	NES08470268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79420553 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	within coordinates
Rr247297	regulatory region 247297	1047 bp proximal
Rr402776	regulatory region 402776	749 bp downstream
Tssr103449	transcription start site region 103449	1590 bp downstream
Tssr103450	transcription start site region 103450	1535 bp downstream
Tssr103451	transcription start site region 103451	1512 bp downstream
Tssr109512	transcription start site region 109512	665 bp downstream
Tssr109513	transcription start site region 109513	680 bp downstream
Tssr109514	transcription start site region 109514	696 bp downstream
Tssr109515	transcription start site region 109515	714 bp downstream
Tssr109516	transcription start site region 109516	748 bp downstream
Tssr109517	transcription start site region 109517	775 bp downstream
Tssr109518	transcription start site region 109518	790 bp downstream
Tssr109519	transcription start site region 109519	822 bp downstream
Tssr109520	transcription start site region 109520	842 bp downstream
Tssr109521	transcription start site region 109521	878 bp downstream