rs28228845 SNP Detail

Summary

• ID
  rs28228845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79419899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTATCAG CTATCTGCTT
  AGAGGTCTCT CTGGGGGTGT CATGTCTGCC CCAAGTGCAG CTAACCTAGC AAGAGACATT
  TGGCTACACC TTTAGAGAAA TAAGTTGTTT CTTCTCTTTA AAAAGTCAGC CTACCTCTGC
  CTCCTGAGTT CTGGGAGCAA AGGTGGGTAG CCAGGACCAG ATGAGGTGTT TATAATACTA
  Y
  ACCTGTTCTC CAGAGTCACC CTTGGAAAAA TATTTTATTC AGAGCATAAA TGAGAGGAGC
  CTGAGCAAAC TCTAGACTGT TCTAAGACTC AATGAGTGTA GTTGTCTTGT TAAGATTGTT
  TTATAGCTGT TACTTTCAAA CTTGACTATG TGGAGGAGTT TTTTTTTTCA GGTCTAGGTT
  AGGGCCTAAG ATTCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151174	NES08470283	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	C	T	T	T		T	T	T	T		C
ss323760132	CHEV_11_79342575	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228845					SNP	T	T	C	C	T	T	C	T	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151174	NES08470283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79419899 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	within coordinates
Rr247297	regulatory region 247297	1701 bp proximal
Rr402775	regulatory region 402775	1824 bp downstream
Rr402776	regulatory region 402776	95 bp downstream
Tssr103449	transcription start site region 103449	936 bp downstream
Tssr103450	transcription start site region 103450	881 bp downstream
Tssr103451	transcription start site region 103451	858 bp downstream
Tssr109511	transcription start site region 109511	1382 bp upstream
Tssr109512	transcription start site region 109512	1319 bp downstream
Tssr109513	transcription start site region 109513	1334 bp downstream
Tssr109514	transcription start site region 109514	1350 bp downstream
Tssr109515	transcription start site region 109515	1368 bp downstream
Tssr109516	transcription start site region 109516	1402 bp downstream
Tssr109517	transcription start site region 109517	1429 bp downstream
Tssr109518	transcription start site region 109518	1444 bp downstream
Tssr109519	transcription start site region 109519	1476 bp downstream
Tssr109520	transcription start site region 109520	1496 bp downstream
Tssr109521	transcription start site region 109521	1532 bp downstream