rs28228848 SNP Detail

Summary

• ID
  rs28228848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79419171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCTTT TGTGCTGTGC
  TTCCTCTTTG AAGGCTCCTT CTCACAGAAG TACCACCCTC TGACAAGCAC AGCCTCATCT
  TGAAGGAAAG GAGAACATGG CCTTGAAAGT TTCGTTTCAA GTTTTAAAAG ATATAACAAG
  TGGCTTTTTT TGTGGGAGAG GGAGGGTGGA GGTTGGTGGA GCCTGAGAGC AAGTGTGCAT
  Y
  AAATGAGAAT GTGAAGTGCG TTTGTCCTTT CCAGCATGAT GCTAAGCAGC TTGAGGACTC
  TGGTCCTAGG ATGCAACTCT GTGAGTACCG CTGATTCCAC CTCTGTTGCT GTAGCTGGCT
  ATGGCTTTCC AATAGCAGAG GCACAGTGCT TCTCTCAACC AGAACCCGGA AAAACAAAAG
  ACTTCTTTGC TCTCAAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151177	NES08470313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228848					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151177	NES08470313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79419171 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	29 bp proximal
Rr402775	regulatory region 402775	1096 bp downstream
Rr402776	regulatory region 402776	333 bp upstream
Tssr103449	transcription start site region 103449	208 bp downstream
Tssr103450	transcription start site region 103450	153 bp downstream
Tssr103451	transcription start site region 103451	130 bp downstream
Tssr109511	transcription start site region 109511	654 bp upstream