rs28228849 SNP Detail

Summary

• ID
  rs28228849
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79419105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCG TTTCAAGTTT TAAAAGATAT
  M
  ACAAGTGGCT TTTTTTGTGG GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151178	NES08470311	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	A	A	A		C	A	A	C		C
ss323760129	CHEV_11_79341781	CHEVERUD	SCREENING_POP	f	SNP							C					C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228849					SNP	C	C	A	A	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151178	NES08470311	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79419105 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	95 bp proximal
Rr402775	regulatory region 402775	1030 bp downstream
Rr402776	regulatory region 402776	399 bp upstream
Tssr103449	transcription start site region 103449	142 bp downstream
Tssr103450	transcription start site region 103450	87 bp downstream
Tssr103451	transcription start site region 103451	64 bp downstream
Tssr109511	transcription start site region 109511	588 bp upstream