rs28228849 SNP Detail

Summary

• ID
  rs28228849
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:79419105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCG TTTCAAGTTT TAAAAGATAT
  M
  ACAAGTGGCT TTTTTTGTGG GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151178	NES08470311	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	A	A	A		C	A	A	C		C
ss323760129	CHEV_11_79341781	CHEVERUD	SCREENING_POP	f	SNP							C					C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228849					SNP	C	C	A	A	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151178	NES08470311	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79419105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Evi2	ecotropic viral integration site 2			Intron
Evi2a	ecotropic viral integration site 2a			Intron
				mRNA-UTR
Nf1	neurofibromin 1			Intron
Rr402775	regulatory region 402775			1030 bp downstream
Rr402776	regulatory region 402776			399 bp upstream
Rr452271	regulatory region 452271			1419 bp proximal
Tssr103449	transcription start site region 103449			142 bp downstream
Tssr103450	transcription start site region 103450			87 bp downstream
Tssr103451	transcription start site region 103451			64 bp downstream
Tssr109511	transcription start site region 109511			588 bp upstream