rs28228854 SNP Detail

Summary

• ID
  rs28228854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79418029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCCACAGCCT AGTTGAGTTT TTCAGTTCCT TCTTCGTGCT
  TTCTCTCCCT GGCTGCTGTA AGCACACCAG GAGATTGCAA TAGGAGGTTG GAGCCTGTGA
  R
  CTCCTTTGCT CTTTTCCAAG TGTCCGACTC AGCAGTCCAG AGCCCACTAC TTGCCAGAAA
  GTCACCGTTG CTCCGCGGCT GGCGCTTGCC TACTTGCTTT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151183	NES08470306	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	G	G	G	G	A		G	G	G
ss132448502	ENSMUSSNP5226488	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228854					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151183	NES08470306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79418029 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm165	DNA segment, Chr 11, Boehm 165	1291 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	1171 bp proximal
Rr402775	regulatory region 402775	within coordinates
Rr402776	regulatory region 402776	1475 bp upstream
Tssr103449	transcription start site region 103449	929 bp upstream
Tssr103450	transcription start site region 103450	975 bp upstream
Tssr103451	transcription start site region 103451	1000 bp upstream
Tssr109510	transcription start site region 109510	1350 bp upstream
Tssr109511	transcription start site region 109511	471 bp downstream