rs28228855 SNP Detail

Summary

• ID
  rs28228855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79417892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTCATGT TATTTCTATT
  AGTTTCTTTA GCTGCTGTTG TTTTACTTTC TTAAAAATAT GAAGTACGAA ACAGATATAA
  ACCTTGAGCA AGCATACATC TCCCTTTCTG GTCTGACGCT AAACAAAGAG CATGTCAGAC
  TTTGGATCAT CTGAGCAAAC GTGGATGGGA AATACCACCA GCCAGCTTTA TTTCTAACTC
  Y
  GCCTTCCTCA TTGCTGCTTT GCATTTCCCT TTCCAACCCA CAGCCTAGTT GAGTTTTTCA
  GTTCCTTCTT CGTGCTTTCT CTCCCTGGCT GCTGTAAGCA CACCAGGAGA TTGCAATAGG
  AGGTTGGAGC CTGTGAGCTC CTTTGCTCTT TTCCAAGTGT CCGACTCAGC AGTCCAGAGC
  CCACTACTTG CCAGAAAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37151184	NES08470305	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	T	T	T	T		C		T	T		C
ss132448498	ENSMUSSNP1871278	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T					C
ss323760128	CHEV_11_79340568	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28228855					SNP	T	T	T	C	C	T	T	T	T	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151184	NES08470305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79417892 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm165	DNA segment, Chr 11, Boehm 165	1154 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	1308 bp proximal
Rr402775	regulatory region 402775	within coordinates
Rr402776	regulatory region 402776	1612 bp upstream
Tssr103449	transcription start site region 103449	1066 bp upstream
Tssr103450	transcription start site region 103450	1112 bp upstream
Tssr103451	transcription start site region 103451	1137 bp upstream
Tssr109510	transcription start site region 109510	1213 bp upstream
Tssr109511	transcription start site region 109511	608 bp downstream