rs28228856 SNP Detail

Summary

• ID
  rs28228856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79417581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTTTGT TCTAAAGTCT
  GTTTTCATTT ATTGTACAAA ATTAAGTTTT AATGTGTTAT GTATAATAGA AAAGCAGTCT
  TGTCTTACGC CATATGTAAA GGTAAAAAGA TGTAGCCTAA TATTAGCTGT ACTAAGATAG
  CAACTGGTAC AGGTTCTATC TCATCCAGTG AGAATGTACC ATTGCGTTAC ATAGTTGAAT
  Y
  CTACACATTG GGAATTTGAC ATCTGCTTGG CTCTAAGGGC TTAAAAGAAC TCTTCCAAGT
  TCAAGTACAT TCAGACAGAG GTCATTCACT GCTGAACAGG AATGTTTAAT TACCTCATGT
  TATTTCTATT AGTTTCTTTA GCTGCTGTTG TTTTACTTTC TTAAAAATAT GAAGTACGAA
  ACAGATATAA ACCTTGAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151185	NES08470304	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228856					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151185	NES08470304	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79417581 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm165	DNA segment, Chr 11, Boehm 165	843 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247296	regulatory region 247296	1619 bp proximal
Rr402775	regulatory region 402775	193 bp upstream
Rr402776	regulatory region 402776	1923 bp upstream
Tssr103449	transcription start site region 103449	1377 bp upstream
Tssr103450	transcription start site region 103450	1423 bp upstream
Tssr103451	transcription start site region 103451	1448 bp upstream
Tssr109510	transcription start site region 109510	902 bp upstream
Tssr109511	transcription start site region 109511	919 bp downstream