rs28228868 SNP Detail

Summary

• ID
  rs28228868
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79409261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTGAAA CTTTGAAGGC
  TTAAGTTCCG AAGTTCCGGC TGATACTGTC CACTTAACTC AGTGTGTGAG GTCACCTATG
  TGTGTTGTTT TCAGTAGCCT CACGCTCTAA AGTGACATTG TCAGTGCTGA GGATAATGGG
  CTCTTCTGGA CATCCCCAAG CATAGTGTCT CTCTCTGAGA GAGCTGAGCT GTCTCTTAAC
  K
  TGAAGGAGGG ACAAGCTCAG ACTGTTAGAT ACTAGTTTCT GTGTATGATA AGAAATTCAT
  TTTTCCAGGA CTCTGAAGAT GCAATAGAAG GTTTTGACAG TTTGAGTAGT TTGTATTTCT
  TTACCCAGTT ACCACTAGCA TAGTAGAATG ATGATGACAA ATGACACCCT TCTTGTTCAT
  TCTCTCTCTT GTTTGTTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151197	NES08470459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228868					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151197	NES08470459	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79409261 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Rr247293	regulatory region 247293	939 bp proximal
Rr402773	regulatory region 402773	1477 bp upstream
Tssr103448	transcription start site region 103448	1777 bp upstream
Tssr109494	transcription start site region 109494	1988 bp upstream
Tssr109495	transcription start site region 109495	1952 bp upstream
Tssr109496	transcription start site region 109496	1931 bp upstream
Tssr109497	transcription start site region 109497	1880 bp upstream
Tssr109498	transcription start site region 109498	1838 bp upstream
Tssr109499	transcription start site region 109499	1802 bp upstream
Tssr109500	transcription start site region 109500	1771 bp upstream
Tssr109501	transcription start site region 109501	1731 bp upstream
Tssr109502	transcription start site region 109502	1707 bp upstream
Tssr109503	transcription start site region 109503	1630 bp upstream
Tssr109504	transcription start site region 109504	236 bp downstream
Tssr109505	transcription start site region 109505	395 bp downstream
Tssr109506	transcription start site region 109506	918 bp downstream