rs28228869 SNP Detail

Summary

• ID
  rs28228869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:79408628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACACTC GTGTACACAC
  ACTCACACAT GAACACATAC ACAGAATGAA AGTTAAAAAT ACAATCTAAA AGAAAAAACA
  AAAACCAAGA AAATCCTAAA GTGATTCAAG TCTCTCTAGC CCAGTTGGTC AAATAAGCAA
  GCCCATTACT GCTCTCATTC TGATACTGGA CAACCACCTT TGCACATCAG ACCCTAGTCT
  R
  GATTTGATAA ATTTAAAAAA ATTAAGTTGC TTTCAAGTGT TTTAAACTCT TACGGTAAAA
  ATTAGCAGGT AAAAAGTAAT CTCAGCCAGG TGTGGTGGTT CACACCTTTA ATCCCAGCAG
  AGGCAAGTAA TCTCTGTGAG TTTGAAGCGA GCCTGGTATG CATAGGGAGT TCCAGTACAG
  CCAGGGCAAC AAAGAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151198	NES08470475	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228869					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151198	NES08470475	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79408628 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	Intron
Evi2b	ecotropic viral integration site 2b	Intron
Nf1	neurofibromin 1	Intron
Rr452267	regulatory region 452267	1748 bp proximal
Tssr109488	transcription start site region 109488	1834 bp upstream
Tssr109489	transcription start site region 109489	1530 bp upstream
Tssr109490	transcription start site region 109490	1473 bp upstream
Tssr109491	transcription start site region 109491	1439 bp upstream
Tssr109492	transcription start site region 109492	1390 bp upstream
Tssr109493	transcription start site region 109493	1372 bp upstream
Tssr109494	transcription start site region 109494	1355 bp upstream
Tssr109495	transcription start site region 109495	1319 bp upstream
Tssr109496	transcription start site region 109496	1298 bp upstream
Tssr109497	transcription start site region 109497	1247 bp upstream
Tssr109498	transcription start site region 109498	1205 bp upstream
Tssr109499	transcription start site region 109499	1169 bp upstream
Tssr109500	transcription start site region 109500	1138 bp upstream
Tssr109501	transcription start site region 109501	1098 bp upstream
Tssr109502	transcription start site region 109502	1074 bp upstream
Tssr109503	transcription start site region 109503	997 bp upstream
Tssr109504	transcription start site region 109504	869 bp downstream
Tssr109505	transcription start site region 109505	1028 bp downstream
Tssr109506	transcription start site region 109506	1551 bp downstream