rs28228871 SNP Detail

Summary

• ID
  rs28228871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79408175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCAGTTA GATCTTTTTT GCTCCTGTCT CCTAAATATA
  GACACTCAGC ATCCAATCTC TCTCTACCTT TCATTTTTCT TTGTTCTAGT TCTGTAAGTG
  Y
  CCACTCTCAC CCTTCTGCTA TAACTACCAA ACCTGTGCAA CCTGAACCTC CTTTGTTCTG
  AGTCCATTTG TATCATGTCT TAGTGGGCAT GTTTTATATA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151200	NES08470557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228871					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151200	NES08470557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79408175 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	1768 bp upstream
Tssr109487	transcription start site region 109487	1570 bp upstream
Tssr109488	transcription start site region 109488	1381 bp upstream
Tssr109489	transcription start site region 109489	1077 bp upstream
Tssr109490	transcription start site region 109490	1020 bp upstream
Tssr109491	transcription start site region 109491	986 bp upstream
Tssr109492	transcription start site region 109492	937 bp upstream
Tssr109493	transcription start site region 109493	919 bp upstream
Tssr109494	transcription start site region 109494	902 bp upstream
Tssr109495	transcription start site region 109495	866 bp upstream
Tssr109496	transcription start site region 109496	845 bp upstream
Tssr109497	transcription start site region 109497	794 bp upstream
Tssr109498	transcription start site region 109498	752 bp upstream
Tssr109499	transcription start site region 109499	716 bp upstream
Tssr109500	transcription start site region 109500	685 bp upstream
Tssr109501	transcription start site region 109501	645 bp upstream
Tssr109502	transcription start site region 109502	621 bp upstream
Tssr109503	transcription start site region 109503	544 bp upstream
Tssr109504	transcription start site region 109504	1322 bp downstream
Tssr109505	transcription start site region 109505	1481 bp downstream