rs28228873 SNP Detail

Summary

• ID
  rs28228873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79408069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCC TTGTATTACA GTTTTTCCTT
  Y
  GCACCACTTC AGTTAGATCT TTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151202	NES08470555	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	T	T	T		C	T	T	C		C
ss323760119	CHEV_11_79330745	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228873					SNP	T	T	C	C	T	T	T	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151202	NES08470555	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79408069 () rs orientation: forward

Symbol	Name	Function Class
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	1662 bp upstream
Tssr109487	transcription start site region 109487	1464 bp upstream
Tssr109488	transcription start site region 109488	1275 bp upstream
Tssr109489	transcription start site region 109489	971 bp upstream
Tssr109490	transcription start site region 109490	914 bp upstream
Tssr109491	transcription start site region 109491	880 bp upstream
Tssr109492	transcription start site region 109492	831 bp upstream
Tssr109493	transcription start site region 109493	813 bp upstream
Tssr109494	transcription start site region 109494	796 bp upstream
Tssr109495	transcription start site region 109495	760 bp upstream
Tssr109496	transcription start site region 109496	739 bp upstream
Tssr109497	transcription start site region 109497	688 bp upstream
Tssr109498	transcription start site region 109498	646 bp upstream
Tssr109499	transcription start site region 109499	610 bp upstream
Tssr109500	transcription start site region 109500	579 bp upstream
Tssr109501	transcription start site region 109501	539 bp upstream
Tssr109502	transcription start site region 109502	515 bp upstream
Tssr109503	transcription start site region 109503	438 bp upstream
Tssr109504	transcription start site region 109504	1428 bp downstream
Tssr109505	transcription start site region 109505	1587 bp downstream