rs28228874 SNP Detail

Summary

• ID
  rs28228874
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79406423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCAGCT GTCACTTTAC
  AGCAGCTCTG TAGGTGGAGG TGGCAGGGAG TCTGTGAGGT CTGGATGGAG GTCAGGAGTA
  GAGAACTCCT GGCATTGAGC CTCGTGGGCC GACTCTTGAT TGTTTATAAA ATCTCCTGCT
  GACAGAGGCA CATTAAATGA GTCAGGGGGT GGCGGGAATG GCTCTTGGAT CTTGGAATGC
  K
  GTTCTTCACA CACTTGATTT AGACCATCTG GAGATGGTTG GGGATTGATA GAATCATTTG
  GTAAAGGAGA TACAACTGTC ACTGTGGGCT TGTTTGGTAG GTTCTCATCC AAATCAAGAA
  GGGGAGGTGG CAGGGCCAGA TCTGCATCAT CTGAAGACAC GGCTGTACCA ACTGTTGACC
  CATCAGCACT GTCTTCTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151203	NES08470554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228874					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151203	NES08470554	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79406423 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	676 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	866 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	16 bp upstream
Tssr109487	transcription start site region 109487	170 bp downstream
Tssr109488	transcription start site region 109488	368 bp downstream
Tssr109489	transcription start site region 109489	674 bp downstream
Tssr109490	transcription start site region 109490	721 bp downstream
Tssr109491	transcription start site region 109491	754 bp downstream
Tssr109492	transcription start site region 109492	781 bp downstream
Tssr109493	transcription start site region 109493	820 bp downstream
Tssr109494	transcription start site region 109494	835 bp downstream
Tssr109495	transcription start site region 109495	875 bp downstream
Tssr109496	transcription start site region 109496	888 bp downstream
Tssr109497	transcription start site region 109497	927 bp downstream
Tssr109498	transcription start site region 109498	988 bp downstream
Tssr109499	transcription start site region 109499	1025 bp downstream
Tssr109500	transcription start site region 109500	1056 bp downstream
Tssr109501	transcription start site region 109501	1096 bp downstream
Tssr109502	transcription start site region 109502	1122 bp downstream
Tssr109503	transcription start site region 109503	1197 bp downstream