rs28228876 SNP Detail

Summary

• ID
  rs28228876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79406326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAAGAGT CTCTCAGGTG
  CCAGGTGTCA TGTCCTGTGT GCCATACCAC GAAGACAGGA ACGTGTCGGT GCCATCTCAG
  GATGGAGGGC AGTCTAGAAA GCCAGCTGTC ACTTTACAGC AGCTCTGTAG GTGGAGGTGG
  CAGGGAGTCT GTGAGGTCTG GATGGAGGTC AGGAGTAGAG AACTCCTGGC ATTGAGCCTC
  R
  TGGGCCGACT CTTGATTGTT TATAAAATCT CCTGCTGACA GAGGCACATT AAATGAGTCA
  GGGGGTGGCG GGAATGGCTC TTGGATCTTG GAATGCTGTT CTTCACACAC TTGATTTAGA
  CCATCTGGAG ATGGTTGGGG ATTGATAGAA TCATTTGGTA AAGGAGATAC AACTGTCACT
  GTGGGCTTGT TTGGTAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151205	NES08470552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228876					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151205	NES08470552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79406326 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	579 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	769 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	69 bp downstream
Tssr109487	transcription start site region 109487	267 bp downstream
Tssr109488	transcription start site region 109488	465 bp downstream
Tssr109489	transcription start site region 109489	771 bp downstream
Tssr109490	transcription start site region 109490	818 bp downstream
Tssr109491	transcription start site region 109491	851 bp downstream
Tssr109492	transcription start site region 109492	878 bp downstream
Tssr109493	transcription start site region 109493	917 bp downstream
Tssr109494	transcription start site region 109494	932 bp downstream
Tssr109495	transcription start site region 109495	972 bp downstream
Tssr109496	transcription start site region 109496	985 bp downstream
Tssr109497	transcription start site region 109497	1024 bp downstream
Tssr109498	transcription start site region 109498	1085 bp downstream
Tssr109499	transcription start site region 109499	1122 bp downstream
Tssr109500	transcription start site region 109500	1153 bp downstream
Tssr109501	transcription start site region 109501	1193 bp downstream
Tssr109502	transcription start site region 109502	1219 bp downstream
Tssr109503	transcription start site region 109503	1294 bp downstream