rs28228877 SNP Detail

Summary

• ID
  rs28228877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79406195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTATTGA AATATCTATC
  ATTAACATAT ATAAAAGGCA CTCTGATTTA AAAATTACTT CTGTAGCTGG TAAGCATACC
  ACTGTAATAA TCTACCCGTG TACGTGGGCT TCAGTCAGGG GTCAGGTAGT CCCTAAAGAG
  TCTCTCAGGT GCCAGGTGTC ATGTCCTGTG TGCCATACCA CGAAGACAGG AACGTGTCGG
  W
  GCCATCTCAG GATGGAGGGC AGTCTAGAAA GCCAGCTGTC ACTTTACAGC AGCTCTGTAG
  GTGGAGGTGG CAGGGAGTCT GTGAGGTCTG GATGGAGGTC AGGAGTAGAG AACTCCTGGC
  ATTGAGCCTC GTGGGCCGAC TCTTGATTGT TTATAAAATC TCCTGCTGAC AGAGGCACAT
  TAAATGAGTC AGGGGGTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151206	NES08470551	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28228877					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151206	NES08470551	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79406195 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	448 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	638 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	200 bp downstream
Tssr109487	transcription start site region 109487	398 bp downstream
Tssr109488	transcription start site region 109488	596 bp downstream
Tssr109489	transcription start site region 109489	902 bp downstream
Tssr109490	transcription start site region 109490	949 bp downstream
Tssr109491	transcription start site region 109491	982 bp downstream
Tssr109492	transcription start site region 109492	1009 bp downstream
Tssr109493	transcription start site region 109493	1048 bp downstream
Tssr109494	transcription start site region 109494	1063 bp downstream
Tssr109495	transcription start site region 109495	1103 bp downstream
Tssr109496	transcription start site region 109496	1116 bp downstream
Tssr109497	transcription start site region 109497	1155 bp downstream
Tssr109498	transcription start site region 109498	1216 bp downstream
Tssr109499	transcription start site region 109499	1253 bp downstream
Tssr109500	transcription start site region 109500	1284 bp downstream
Tssr109501	transcription start site region 109501	1324 bp downstream
Tssr109502	transcription start site region 109502	1350 bp downstream
Tssr109503	transcription start site region 109503	1425 bp downstream