rs28228878 SNP Detail

Summary

• ID
  rs28228878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79406175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC ATGTCCTGTG TGCCATACCA
  Y
  GAAGACAGGA ACGTGTCGGT GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151207	NES08470550	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	C	C	C	C	C		C	C	C	C		C
ss323760118	CHEV_11_79328851	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228878					SNP	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151207	NES08470550	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79406175 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	428 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	618 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	220 bp downstream
Tssr109487	transcription start site region 109487	418 bp downstream
Tssr109488	transcription start site region 109488	616 bp downstream
Tssr109489	transcription start site region 109489	922 bp downstream
Tssr109490	transcription start site region 109490	969 bp downstream
Tssr109491	transcription start site region 109491	1002 bp downstream
Tssr109492	transcription start site region 109492	1029 bp downstream
Tssr109493	transcription start site region 109493	1068 bp downstream
Tssr109494	transcription start site region 109494	1083 bp downstream
Tssr109495	transcription start site region 109495	1123 bp downstream
Tssr109496	transcription start site region 109496	1136 bp downstream
Tssr109497	transcription start site region 109497	1175 bp downstream
Tssr109498	transcription start site region 109498	1236 bp downstream
Tssr109499	transcription start site region 109499	1273 bp downstream
Tssr109500	transcription start site region 109500	1304 bp downstream
Tssr109501	transcription start site region 109501	1344 bp downstream
Tssr109502	transcription start site region 109502	1370 bp downstream
Tssr109503	transcription start site region 109503	1445 bp downstream