rs28228879 SNP Detail

Summary

• ID
  rs28228879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79405730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGACTTG GAGTCAGTTC
  CAGGACTCAC GGGGCATTGG CAAATGTTAG TAGTGCCATC TTCTGTCTTA TATATATGTG
  TGTGTGTGTG ACTATATGAA TATATACACA CATATTCAGG CAAAACTCTT ATATACATAA
  AATTTTTAAT TATAAAGAAA AAAGAAAATT TTATGGTAAG TGCTCACTTT TTCAGGGTAA
  R
  TGTATCCCAA ACACAGCACT CAGACTTCAT GTTTTAATAC AGTTTGGTAG CTGTGTGTTT
  AATCTCTATA AATGAAAATA TTTACTTAAT ATTTGAAGTA TTAAAACTTT GACCATTTAA
  AAATTTCCAT TTTTATTATA CCCCAAATTT TGAGGTGGAA AAAATAGAAT TTTATTTATT
  TAAGATATGT TTATATACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151208	NES08470549	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	A	A	A	A	A	A		A	A	A	A		A
ss323760115	CHEV_11_79328406	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28228879					SNP	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151208	NES08470549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79405730 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	within coordinates
D11Bhm167	DNA segment, Chr 11, Boehm 167	173 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	152 bp downstream
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	665 bp downstream
Tssr109487	transcription start site region 109487	863 bp downstream
Tssr109488	transcription start site region 109488	1061 bp downstream
Tssr109489	transcription start site region 109489	1367 bp downstream
Tssr109490	transcription start site region 109490	1414 bp downstream
Tssr109491	transcription start site region 109491	1447 bp downstream
Tssr109492	transcription start site region 109492	1474 bp downstream
Tssr109493	transcription start site region 109493	1513 bp downstream
Tssr109494	transcription start site region 109494	1528 bp downstream
Tssr109495	transcription start site region 109495	1568 bp downstream
Tssr109496	transcription start site region 109496	1581 bp downstream
Tssr109497	transcription start site region 109497	1620 bp downstream
Tssr109498	transcription start site region 109498	1681 bp downstream
Tssr109499	transcription start site region 109499	1718 bp downstream
Tssr109500	transcription start site region 109500	1749 bp downstream
Tssr109501	transcription start site region 109501	1789 bp downstream
Tssr109502	transcription start site region 109502	1815 bp downstream
Tssr109503	transcription start site region 109503	1890 bp downstream