rs28230167 SNP Detail

Summary

• ID
  rs28230167
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78073857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCCTTCTTA GCTTTCAAGG CCTTCGCTTT GGCTTCGGCT
  TTGGGAGGGG CAGGAGCTGG GAGAGGACAA TTAAAATTAA GTGTGGCATT CGTAAAGTGA
  S
  CCCTTCCGGC CGTCCTGCCA GCATGTGCAT CAGTGGTTCC TTTGAAGACA TCACAGGTCT
  CAGGAGACTT CAGATTTTTT CCATCATATG CACGATACCA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37153305	NES08473219	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28230167					SNP	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37153305	NES08473219	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78073857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3335	CpG island 3335	108 bp proximal
Rpl23a	ribosomal protein L23A	within coordinates
Rr402760	regulatory region 402760	407 bp upstream
Rr451902	regulatory region 451902	within coordinates
Rr451903	regulatory region 451903	213 bp proximal
Rr451904	regulatory region 451904	543 bp proximal
Snord4a	small nucleolar RNA, C/D box 4A	1275 bp upstream
Snord42a	small nucleolar RNA, C/D box 42A	1685 bp upstream
Snord42b	small nucleolar RNA, C/D box 42B	28 bp downstream
Tssr109378	transcription start site region 109378	141 bp downstream
Tssr109379	transcription start site region 109379	520 bp downstream