rs28232329 SNP Detail

Summary

• ID
  rs28232329
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75062048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACCCATA AGGAGGTCGG CTGGGTCTTC AGTTCCTTCT
  TGTTCTATCC CTCTCCACCG ACTCAAGCCC TTGTTGTATC GCTATGGGGC CAACCACATA
  M
  ACCTTGCCCA AGTTTCACTG TGTACTCCCC TCCCCTCCCC TCCCCTTCTC TCCTCTCCTC
  TCCTCCACGC CCCACCACCA CCACCACCAC AGTTTCAAGT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
ss37158060	NES08472848	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ
rs28232329					SNP	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158060	NES08472848	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75062048 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	786 bp upstream
Cpgi3251	CpG island 3251	1809 bp distal
Cpgi3252	CpG island 3252	299 bp distal
Cpgi3253	CpG island 3253	111 bp proximal
Cpgi3254	CpG island 3254	854 bp proximal
Hic1	hypermethylated in cancer 1	1703 bp upstream
Rr402719	regulatory region 402719	1776 bp upstream
Rr451074	regulatory region 451074	1990 bp distal
Rr451075	regulatory region 451075	1948 bp distal
Rr451076	regulatory region 451076	1213 bp distal
Rr451077	regulatory region 451077	551 bp distal
Rr451078	regulatory region 451078	763 bp proximal
Rr451079	regulatory region 451079	1991 bp proximal
Tssr102928	transcription start site region 102928	1222 bp upstream
Tssr102929	transcription start site region 102929	1249 bp upstream
Tssr102930	transcription start site region 102930	1331 bp upstream