rs28233596 SNP Detail

Summary

• ID
  rs28233596
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67576147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCCCGA GATGACACTT
  CCTCCAGCAT AACCCCAGTT GGCTGACGTG AGCCTATTCC ATCTGAGGCC ATTCTCTCTT
  TGGTTCCTTT CTAATCTATC CACACATGCC TTTCCCTTCT TTGATCCCCT CCCTTCCATT
  GTTCATTCAT GAAGAGTTTT GTTAGAGACA AGCAATCTGT AATCCCTCAC CTGAAGACCG
  M
  AGACTGCAGC TCTGTCATGC GAGGAAGCGC TCAAGTGTCC TGTGCGAACC CCTCGCCTCT
  TCCTGAGATA GACTTGGCTC TCCCTCTTGG ATACTCTGCC CATTGAGTTC TCGGTGGTAC
  CAGCTACATG CCAGTTCCTG AGCATCCTTT ATGTGCATTT GCATTCTCAG TGGTCCTGCC
  TGTATGCTGG TTCACATCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37171128	NES08487568	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28233596					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171128	NES08487568	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67576147 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	347 bp downstream
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102274	transcription start site region 102274	1790 bp downstream
Tssr102275	transcription start site region 102275	1412 bp downstream
Tssr102276	transcription start site region 102276	1098 bp downstream
Tssr102277	transcription start site region 102277	686 bp downstream
Tssr102278	transcription start site region 102278	634 bp downstream
Tssr102279	transcription start site region 102279	257 bp downstream
Tssr102280	transcription start site region 102280	1323 bp upstream
Tssr102281	transcription start site region 102281	1811 bp upstream