rs28233600 SNP Detail

Summary

• ID
  rs28233600
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67575354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCCTCA ACACTGTCGC
  ACCCTTGACC AGCACTCCTC TGTGCTGACT TCAGGCCCTG TGTGACAACA GTAAGAGCTG
  GGTTTTGTTA TTCTCTAGAA TGGCTCCAGC TGTGGGTGTG CACAATGAGG GAGGAACTGC
  TTTCCCCCTT ACTGTCATTG GTCAGTGGAG CAGATTCTCA TGGCTGTAGG TAGTTGCTAC
  M
  CAGGAAGCGA AGGAACTTTG GGGAGTCACA AGGTGAGTGG GTAGGGGGGT GAAGAATTCT
  AGCTGGAAAC TTGTACGGGG GTGAGGGGGG ACATTTTTTC TCATCTTTCC CACAGATGAC
  TCTGTATTTG ACCTGTCTAT CTTCTCCAAG GGCAAAAATC CTCTAAATGC CACTCACATC
  TTTCAGTCTC ACAATGCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37171132	NES08487562	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28233600					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171132	NES08487562	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67575354 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102273	transcription start site region 102273	1993 bp downstream
Tssr102274	transcription start site region 102274	997 bp downstream
Tssr102275	transcription start site region 102275	619 bp downstream
Tssr102276	transcription start site region 102276	305 bp downstream
Tssr102277	transcription start site region 102277	84 bp upstream
Tssr102278	transcription start site region 102278	147 bp upstream
Tssr102279	transcription start site region 102279	521 bp upstream