rs28233604 SNP Detail

Summary

• ID
  rs28233604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67573970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA GCCCGCCCTC TTCTCCAGGC
  Y
  AGGGATCTAC AGACTAGCTC TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37171136	NES08487557	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T	T	T		C	T	T	C		T
ss38815949	mCV24738339	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss132331006	ENSMUSSNP2418854	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss323721080	CHEV_11_67496646	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28233604					SNP	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171136	NES08487557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67573970 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102272	transcription start site region 102272	979 bp downstream
Tssr102273	transcription start site region 102273	609 bp downstream
Tssr102274	transcription start site region 102274	362 bp upstream
Tssr102275	transcription start site region 102275	744 bp upstream
Tssr102276	transcription start site region 102276	1054 bp upstream
Tssr102277	transcription start site region 102277	1468 bp upstream
Tssr102278	transcription start site region 102278	1531 bp upstream
Tssr102279	transcription start site region 102279	1905 bp upstream