rs28233606 SNP Detail

Summary

• ID
  rs28233606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67573276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGAGT GCTTGAGAGG
  CTGAGAGCTG CAGCACAGAT TGCGTTATTC CATCACAGAT GCAGCTTAAA CGCAGCTCTT
  CCTATGGCTC CATGACACTT TGGGCCAATG GGGACAATCG TAGAACCTCT TTCTGAGTCC
  TAGTGGGGAT AATCAGATAC TCTGCTTGTG GGGAGTTCCA CACTGATATG GCAGGGCCAC
  R
  CCCATGACCT TCATCTTCAC CCTAGAGACT GGCTCCTCCT TCATCAGAGT CTAGAGAGTC
  AGATGGGCTG GGGATCCACA GCCAGGGCCT TGTGAATAGG ATACACAGCA GTCCAACACC
  TGCTTGGGGA GGTCCAACTG TTAGGGATAT GCTCAGGGGA CTCTGGTCTT TTCTTCCTCG
  GCAGGAACTG GAGCGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	PWD/PhJ
ss37171138	NES08487606	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	PWD/PhJ
rs28233606					SNP	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37171138	NES08487606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67573276 () rs orientation: forward

Symbol	Name	Function Class
Gas7	growth arrest specific 7	within coordinates
Glp2r	glucagon-like peptide 2 receptor	within coordinates
Tssr102272	transcription start site region 102272	285 bp downstream
Tssr102273	transcription start site region 102273	75 bp upstream
Tssr102274	transcription start site region 102274	1056 bp upstream
Tssr102275	transcription start site region 102275	1438 bp upstream
Tssr102276	transcription start site region 102276	1748 bp upstream